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Re: Python from Matlab (was: *cochlea*: inner ear models in Python)
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Hi everyone,
I wrote one myself (by editing a script that called a different program): a=
ttached and free for all.
This should do the trick until MatLab has native python support.
Kind regards,
Benjamin Schultz
-----Original Message-----
From: AUDITORY - Research in Auditory Perception [mailto:AUDITORY@xxxxxxxxx=
ILL.CA] On Behalf Of Alain de Cheveigne
Sent: Friday, 22 August 2014 3:44 AM
To: AUDITORY@xxxxxxxxxxxxxxx
Subject: Python from Matlab (was: *cochlea*: inner ear models in Python)
Hi Marek,=20
I am looking for the opposite: an easy, efficient and reliable way to call=
Python from Matlab. My programming environment nowdays is matlab and I ca=
n't easily change. The best course that I see is to implement new code in =
Python and call it from matlab, and make the switch to Python when Python c=
ode reaches critical mass. I suspect many people are in a similar position=
.
Alain
On 21 Aug 2014, at 11:20, Marek Rudnicki <marek.rudnicki@xxxxxx> wrote:
> Etienne Gaudrain <e.p.c.gaudrain@xxxxxxx> writes:
>=20
>> Dear Marek,
>>=20
>> This looks very promising, I'm glad to finally see the first signs of=20
>> a shift from Matlab to Python. Thanks a lot for sharing this!!
>=20
> Dear Etienne
>=20
> I'm glad you like it.
>=20
> BTW, if you still have some MATLAB legacy code that you would like to=20
> use in Python, then matlab_wrapper [1] could be helpful. It allows=20
> you to call MATLAB functions directly from Python environment (the=20
> MATLAB process is started in the background), e.g.:
>=20
> matlab.workspace.sin([0.1, 0.2, 0.3])
>=20
>=20
> Cheers
> Marek
>=20
>=20
> [1] https://github.com/mrkrd/matlab_wrapper
>=20
>=20
>=20
>> On 19/08/2014 14:50, Marek Rudnicki wrote:
>>> Hi all,
>>>=20
>>> we would like to announce *cochlea* -- a collection of inner ear=20
>>> models in Python. It was developed in the group of Werner Hemmert=20
>>> [1] at the Technische Universit=E4t M=FCnchen. After a few years of=20
>>> development, we decided that it is stable and would like to=20
>>> contribute it to the auditory community.
>>>=20
>>>=20
>>>=20
>>> The main features of the package are:
>>>=20
>>> - simple to use (each model is implemented as a single Python
>>> function: sound in, spikes out)
>>> - fast (you can generate responses of hundreds or even thousands of
>>> nerve fibers)
>>> - all models have the same interface (easy to make comparisons and
>>> pick the one that best suits your needs)
>>> - up-to-date (recent models included)
>>>=20
>>>=20
>>>=20
>>> Currently implemented models are:
>>>=20
>>> - Zilany, M. S., Bruce, I. C., & Carney, L. H. (2014). Updated
>>> parameters and expanded simulation options for a model of the
>>> auditory periphery. The Journal of the Acoustical Society of
>>> America, 135(1), 283-286.
>>> - Zilany, M. S., Bruce, I. C., Nelson, P. C., & Carney,
>>> L. H. (2009). A phenomenological model of the synapse between the
>>> inner hair cell and auditory nerve: long-term adaptation with
>>> power-law dynamics. The Journal of the Acoustical Society of
>>> America, 126(5), 2390-2412.
>>> - Holmberg, M. (2007). Speech Encoding in the Human Auditory
>>> Periphery: Modeling and Quantitative Assessment by Means of
>>> Automatic Speech Recognition. PhD thesis, Technical University
>>> Darmstadt.
>>> - MATLAB Auditory Periphery by Meddis et al. (external model, not
>>> implemented in the package, but easily accessible through
>>> matlab_wrapper).
>>>=20
>>>=20
>>>=20
>>> We are really grateful to the authors of those models for allowing=20
>>> us to use their code it in *cochlea*. We release the package under=20
>>> the GNU General Public License, so that you are free to copy, use=20
>>> and modify the code. We also encourage you to contribute back your=20
>>> changes.
>>>=20
>>>=20
>>> The code is distributed on GitHub [2] and the package/documentation=20
>>> are hosted on the Python Package Index [3]. Check also our demo [4]!
>>>=20
>>>=20
>>> If you would like to give a feedback, have questions or found some=20
>>> problem, do not hesitate to email me or open an issue on GitHub [2].
>>>=20
>>>=20
>>> Thank you and best regards
>>> Marek Rudnicki
>>>=20
>>>=20
>>> [1] http://www.imetum.tum.de/research/bai/home/?L=3D1
>>> [2] https://github.com/mrkrd/cochlea [3]=20
>>> https://pythonhosted.org/cochlea/ [4]=20
>>> http://nbviewer.ipython.org/github/mrkrd/cochlea/blob/master/example
>>> s/cochlea_demo.ipynb
-----
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